Muscle user manualtoro ecx manual
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The MUSCLE algorithm is for gene level alignment of either protein or nucleotide sequences. To run a MUSCLE alignment, select two or more sequences and
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Edgar, Robert C (2004), MUSCLE: a multiple sequence alignment method with reduced time . This operation is sometimes called “profile-profile alignment”.
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muscle -in seqs.fa -clw. Input file. Specified using the -in option. Must be in FASTA format. If any gaps are present in the input file, they will be discarded before
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